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Creators/Authors contains: "Hanson, Matthew D."

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  1. Despite the prominence of orbitals throughout the undergraduate chemistry curriculum, high-quality visualization of atomic orbitals is out of reach for most scientists. Rigorously visualizing the atomic orbitals even for simple hydrogen-like atoms and ions is rather challenging due to the complex 3-D structure and geometric variability of the orbitals across three distinct quantum numbers. In this work, a graphical user interface (GUI)-based tool for visualizing 3-D volumetric density plots of hydrogen atomic orbitals is introduced. This tool is written in Python, and a Jupyter notebook version with explanatory blocks interspersed in the code is included for pedagogical purposes. The user can manipulate a large number of features using the GUI, which allows customization of the orbital illustrations. Because this visualizer is capable of visualizing orbitals with any quantum numbers and showing their nodal surfaces, it can serve as a supplement to students’ lecture and textbook education on this topic. 
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  2. Experimental and theoretical studies have highlighted protonated water clusters (PWCs) as important models of the excess proton in aqueous systems. A significant focus has been characterizing the spectral signatures associated with different excess proton solvation motifs. Accurate vibrational frequency calculations are crucial for connecting the measured spectra to the structure of PWCs. In this paper, we extend and characterize a coupled local mode (CLM) approach for calculating the infrared spectra of PWCs using the [Formula: see text] cluster as a benchmark system. The CLM method is relatively low cost and incorporates the anharmonicity and coupling of OH vibrations. Here, we demonstrate the accuracy of the technique compared to experiments. We also illustrate the dependence of calculated spectral features on the underlying electronic structure theory and basis sets used in the local mode frequency and coupling calculations. 
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